[English] 日本語
EMN search
- 3DEM data search -

-
Search query


Keywords
Database /
Q: What are the data sources of EM Navigator?
Data entries / weeks ago
Q: When the data are updated?
Author
Processing method
Display mode
Sort by
Num. of entries / page
Entry
Article
Sample
Experiment
Processing
Max number of data0 for all data
File format
  • CSV format (Comma-Separated Values, for Excel, etc.)
  • TSV format (Tab Separated Values, for Excel, etc.)
  • JSON format

Yorodumi Search

-
Search result

Showing 1 - 50 of 79 items for (author: buda & g)

EMDB-28064:
Cas7-11 in complex with Csx29, focus refined on Cas7-11
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F

EMDB-28065:
Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F

EMDB-28070:
Cas7-11 in complex with Csx29, focus refined on Csx29
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F

EMDB-28071:
Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30, focus refined on Cas7-11 INS domain
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F

EMDB-28072:
Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30, focus refined on Csx29
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F

EMDB-28073:
Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30, focus refined on Csx29 CHAT domain and Csx30
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F

PDB-8eex:
Cas7-11 in complex with Csx29
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F

PDB-8eey:
Cas7-11 in complex with DR-mismatched target RNA, Csx29 and Csx30
Method: single particle / : Demircioglu FE, Wilkinson ME, Strecker J, Li D, Faure G, Macrae RK, Zhang F

EMDB-33695:
Structure of the Cas7-11-Csx29-guide RNA complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H

EMDB-33696:
Structure of the Cas7-11-Csx29-guide RNA-target RNA (no PFS) complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H

EMDB-34218:
Structure of the Cas7-11-Csx29-guide RNA-target RNA (non-matching PFS) complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H

PDB-7y9x:
Structure of the Cas7-11-Csx29-guide RNA complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H

PDB-7y9y:
Structure of the Cas7-11-Csx29-guide RNA-target RNA (no PFS) complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H

PDB-8gs2:
Structure of the Cas7-11-Csx29-guide RNA-target RNA (non-matching PFS) complex
Method: single particle / : Kato K, Okazaki S, Ishikawa J, Isayama Y, Nishizawa T, Nishimasu H

EMDB-24199:
Localized reconstruction of EEEV
Method: single particle / : Chen CL, Kuhn RJ, Klose T

EMDB-24200:
Pre-fusion state 2 of EEEV
Method: single particle / : Chen CL, Kuhn RJ, Klose T

EMDB-24201:
Pre-fusion state 2 of EEEV with localized reconstruction
Method: single particle / : Chen CL, Kuhn RJ, Klose T

EMDB-24202:
EEEV in complex with Fab22 at acidic pH (pH 5.5)
Method: single particle / : Chen CL, Kuhn RJ, Klose T

EMDB-24203:
EEEV in complex with Fab22 at neutral pH (pH 7.4)
Method: single particle / : Chen CL, Kuhn RJ, Klose T

EMDB-24204:
Pre-fusion state 1 of EEEV
Method: single particle / : Chen CL, Kuhn RJ, Klose T

EMDB-24205:
Pre-fusion state 1 of EEEV with localized reconstruction
Method: single particle / : Chen CL, Kuhn RJ, Klose T

PDB-7n69:
Pre-fusion state 2 of EEEV with localized reconstruction
Method: single particle / : Chen CL, Kuhn RJ, Klose T

PDB-7n6a:
Pre-fusion state 1 of EEEV with localized reconstruction
Method: single particle / : Chen CL, Kuhn RJ, Klose T

EMDB-32385:
Structure of Cas7-11 in complex with guide RNA and target RNA
Method: single particle / : Kato K, Okazaki S, Isayama Y, Nishizawa T, Nishimasu H

PDB-7wah:
Structure of Cas7-11 in complex with guide RNA and target RNA
Method: single particle / : Kato K, Okazaki S, Isayama Y, Nishizawa T, Nishimasu H

EMDB-22818:
Cryo-EM structure of Zika virus in complex with E protein cross-linking human monoclonal antibody ADI30056
Method: single particle / : Sevvana M, Rogers TF, Miller AS, Long F, Klose T, Beutler N, Lai YC, Parren M, Walker LM, Buda G, Burton DR, Rossmann MG, Kuhn RJ

PDB-7kcr:
Cryo-EM structure of Zika virus in complex with E protein cross-linking human monoclonal antibody ADI30056
Method: single particle / : Sevvana M, Rogers TF, Miller AS, Long F, Klose T, Beutler N, Lai YC, Parren M, Walker LM, Buda G, Burton DR, Rossmann MG, Kuhn RJ

EMDB-20019:
EEEV glycoproteins bound with heparan sulfate
Method: single particle / : Rossmann MG, Chen CL

EMDB-20025:
Eastern equine encephalitis virus (EEEV)
Method: single particle / : Rossmann MG, Chen CL

PDB-6odf:
EEEV glycoproteins bound with heparan sulfate
Method: single particle / : Rossmann MG, Chen CL

EMDB-9249:
CryoEM structure of chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-42 antibody
Method: single particle / : Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

EMDB-9274:
CryoEM structure of chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-3 antibody
Method: single particle / : Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

EMDB-9275:
CryoEM structure of chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-5 antibody
Method: single particle / : Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

EMDB-9278:
CryoEM structure of Chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-58 Antibody
Method: single particle / : Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

EMDB-9279:
CryoEM structure of Chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-69 Antibody
Method: single particle / : Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

EMDB-9280:
CryoEM structure of chimeric Eastern Equine Encephalitis Virus
Method: single particle / : Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

EMDB-9281:
CryoEM structure of chimeric Eastern Equine Encephalitis Virus: Genome-Binding Capsid N-terminal Domain
Method: single particle / : Hasan SS, Sun C

PDB-6mui:
CryoEM structure of chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-42 antibody
Method: single particle / : Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

PDB-6mw9:
CryoEM structure of chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-3 antibody
Method: single particle / : Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

PDB-6mwc:
CryoEM structure of chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-5 antibody
Method: single particle / : Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

PDB-6mwv:
CryoEM structure of Chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-58 Antibody
Method: single particle / : Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

PDB-6mwx:
CryoEM structure of Chimeric Eastern Equine Encephalitis Virus with Fab of EEEV-69 Antibody
Method: single particle / : Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

PDB-6mx4:
CryoEM structure of chimeric Eastern Equine Encephalitis Virus
Method: single particle / : Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

PDB-6mx7:
CryoEM structure of chimeric Eastern Equine Encephalitis Virus: Genome-Binding Capsid N-terminal Domain
Method: single particle / : Hasan SS, Sun C, Kim AS, Watanabe Y, Chen CL, Klose T, Buda G, Crispin M, Diamond MS, Klimstra WB, Rossmann MG

EMDB-7567:
CryoEM structure of human enterovirus D68 abortive product 1 (pH 7.2 and 4 degrees Celsius)
Method: single particle / : Liu Y, Rossmann MG

EMDB-7569:
CryoEM structure of human enterovirus D68 full native virion (pH 7.2 and 4 degrees Celsius)
Method: single particle / : Liu Y, Rossmann MG

EMDB-7571:
CryoEM structure of human enterovirus D68 A-particle (pH 7.2 and 4 degrees Celsius)
Method: single particle / : Liu Y, Rossmann MG

EMDB-7572:
CryoEM structure of human enterovirus D68 emptied particle (pH 7.2 and 4 degrees Celsius)
Method: single particle / : Liu Y, Rossmann MG

EMDB-7583:
CryoEM structure of human enterovirus D68 expanded 1 particle (pH 7.2 and 4 degrees Celsius)
Method: single particle / : Liu Y, Rossmann MG

EMDB-7589:
CryoEM structure of human enterovirus D68 A-particle (pH 5.5 and 33 degrees Celsius)
Method: single particle / : Liu Y, Rossmann MG

Pages:

+
About EMN search

-
News

-
Feb 9, 2022. New format data for meta-information of EMDB entries

New format data for meta-information of EMDB entries

  • Version 3 of the EMDB header file is now the official format.
  • The previous official version 1.9 will be removed from the archive.

Related info.:EMDB header

External links:wwPDB to switch to version 3 of the EMDB data model

-
Oct 5, 2021. Nobel Prize for mechanically activated and temperature-gated ion channels

Nobel Prize for mechanically activated and temperature-gated ion channels

  • The Nobel Prize in Physiology or Medicine 2021 was awarded jointly to David Julius and Ardem Patapoutian "for their discoveries of receptors for temperature and touch."
  • EM Navigator can help to find cryo-EM structure data by both pioneers.

External links:The Nobel Prize in Physiology or Medicine 2021 - NobelPrize.org / Structure data by Ardem Patapoutian / Structure data by David Julius

+
Aug 12, 2020. Covid-19 info

Covid-19 info

URL: https://pdbj.org/emnavi/covid19.php

New page: Covid-19 featured information page in EM Navigator.

Related info.:Covid-19 info / Mar 5, 2020. Novel coronavirus structure data

+
Mar 5, 2020. Novel coronavirus structure data

Novel coronavirus structure data

Related info.:Yorodumi Speices / Aug 12, 2020. Covid-19 info

External links:COVID-19 featured content - PDBj / Molecule of the Month (242):Coronavirus Proteases

+
Jul 5, 2019. Downlodablable text data

Downlodablable text data

Some data of EM Navigator services can be downloaded as text file. Software such as Excel can load the data files.

PageDataFormat
EMN Searchsearch resultCSV, TSV, or JSON
EMN statisticsdata tableCSV or TSV

Related info.:EMN Search / EMN Statistics

-
EMN Search

3DEM data search

Advanced data search for EMDB and EM data in PDB widh various search and display options

Related info.:EMDB / PDB / EM Navigator / Q: What are the data sources of EM Navigator? / Yorodumi Search / Jul 5, 2019. Downlodablable text data

Read more